Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012036.1 Corchorus capsularis cultivar CVL-1 contig12057, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59332

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
224--266
8
5.4
8
78
10
52
41
4
9
44
1.57
1382--1410
11
2.5
12
88
11
51
51
6
0
41
1.28
1469--1496
12
2.3
12
100
0
56
57
0
0
42
0.99
2744--2792
21
2.3
21
85
0
62
30
0
2
67
1.02
13806--13913
54
2.0
54
87
0
153
42
14
25
16
1.87
22656--22719
32
1.9
33
93
6
112
12
17
23
46
1.81
26219--26281
31
2.0
30
88
11
92
38
14
0
47
1.44
35448--35488
20
2.0
20
90
0
64
26
26
12
34
1.92
36078--36123
23
2.0
24
87
12
69
41
10
13
34
1.79
36736--36786
15
3.5
15
80
20
63
33
0
25
41
1.56
53051--53088
20
1.9
20
88
0
58
42
18
5
34
1.73
54454--54592
70
2.0
70
91
2
226
30
12
16
40
1.85

Tables:   1

The End!