Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001204.1 Corchorus capsularis cultivar CVL-1 contig01204, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 637

Length: 1063
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.33


Found at i:188 original size:39 final size:39

Alignment explanation


    Indices: 145--225  Score: 162
    Period size: 39  Copynumber: 2.1  Consensus size: 39

        135 TATTCAGTAT

                                                   
        145 TTTGCTCTCTTTATTTTGTGCCATATCAGGGCAACTTGG
          1 TTTGCTCTCTTTATTTTGTGCCATATCAGGGCAACTTGG

                                                   
        184 TTTGCTCTCTTTATTTTGTGCCATATCAGGGCAACTTGG
          1 TTTGCTCTCTTTATTTTGTGCCATATCAGGGCAACTTGG

               
        223 TTT
          1 TTT

        226 CCTCGATAAA


Statistics
Matches: 42,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  39   42  1.00

ACGTcount: A:0.15, C:0.20, G:0.20, T:0.46


Consensus pattern (39 bp):   
TTTGCTCTCTTTATTTTGTGCCATATCAGGGCAACTTGG
Done.