genome.fa.s12045.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012045.1 Corchorus capsularis cultivar CVL-1 contig12066, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20984

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33--213	43	4.0	43	74	17	143	56	6	17	18	1.62
77--132	15	3.9	15	74	9	62	57	5	21	16	1.59
2--186	22	8.2	22	72	13	90	56	8	17	17	1.64
33--213	21	8.0	22	75	12	147	56	6	17	18	1.62
3605--3654	6	8.7	6	75	16	52	80	0	20	0	0.72
3610--3654	16	2.8	16	80	13	56	80	0	20	0	0.72
5315--5519	54	3.8	55	82	7	222	27	14	23	34	1.94
5342--5545	109	1.8	113	83	8	274	27	14	23	34	1.94
5631--5987	79	4.2	85	77	12	292	27	16	26	29	1.97
5635--5965	173	2.0	163	82	8	400	27	16	25	29	1.97
5971--6077	46	2.3	46	90	0	160	24	15	23	36	1.94
6307--6408	28	3.6	28	87	11	145	15	13	28	42	1.85
8013--8233	110	2.0	110	99	0	433	34	21	9	35	1.85
8052--8224	55	3.1	55	61	23	128	34	22	9	34	1.86
9022--9078	23	2.4	24	82	2	71	52	5	42	0	1.24
10258--10313	22	2.5	22	91	5	87	53	5	17	23	1.64
10318--10794	55	8.7	55	95	0	758	49	7	17	25	1.72
10330--10475	30	5.2	29	65	21	96	52	6	16	23	1.67
10532--10730	29	7.2	28	60	21	71	48	8	17	26	1.75
10979--11367	22	17.8	22	74	13	227	55	5	20	19	1.62
11029--11367	43	7.7	43	76	10	260	56	5	19	18	1.61
11046--11380	21	15.3	21	71	16	177	56	5	19	18	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11246--11301	15	3.9	15	74	9	62	57	5	21	16	1.59
13907--13945	21	1.9	19	85	10	51	25	10	20	43	1.83
16187--16222	18	2.1	17	94	5	63	11	16	8	63	1.49
17344--17386	4	10.8	4	100	0	86	76	0	0	23	0.78
18559--18645	22	4.0	22	76	8	79	28	28	21	20	1.98
18721--18907	38	5.0	38	87	2	261	35	20	17	27	1.94
18721--18900	75	2.4	75	88	1	263	35	20	16	27	1.94
18910--19332	44	9.7	43	85	5	530	25	21	21	30	1.99

Tables:   1

The End!