Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012047.1 Corchorus capsularis cultivar CVL-1 contig12068, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2181
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:437 original size:11 final size:12

Alignment explanation


    Indices: 421--468  Score: 50
    Period size: 11  Copynumber: 4.2  Consensus size: 12

        411 TTGTAGCAAT

                        
        421 ATTATATAT-TA
          1 ATTATATATATA

                  *     
        432 ATTATAAATATA
          1 ATTATATATATA

                        
        444 A-TATATATAT-
          1 ATTATATATATA

                         
        454 A-TATATATATCA
          1 ATTATATATAT-A

               
        466 ATT
          1 ATT

        469 GACTGTTTTT


Statistics
Matches: 31,  Mismatches: 2, Indels: 6
        0.79            0.05        0.15

Matches are distributed among these distances:
  10   10  0.32
  11   16  0.52
  12    4  0.13
  13    1  0.03

ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48


Consensus pattern (12 bp):   
ATTATATATATA
Done.