Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012051.1 Corchorus capsularis cultivar CVL-1 contig12072, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5631
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31


Found at i:4128 original size:2 final size:2

Alignment explanation


    Indices: 4121--4155  Score: 61
    Period size: 2  Copynumber: 17.5  Consensus size: 2

       4111 TCAAAAGCCA

                                          *                     
       4121 AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       4156 CACACAGAGT


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49


Consensus pattern (2 bp):   
AT

Done.