genome.fa.s12055.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012055.1 Corchorus capsularis cultivar CVL-1 contig12076, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104722

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5416--5483	30	2.2	32	81	7	86	36	26	11	25	1.90
6701--6758	29	2.0	29	83	6	73	29	10	8	51	1.65
16169--16199	16	1.9	16	100	0	62	90	6	0	3	0.55
17323--17362	12	3.5	11	86	6	53	35	0	2	62	1.09
22803--22876	37	2.0	36	82	7	87	51	27	2	18	1.60
26866--26909	1	44.0	1	83	0	52	0	2	6	90	0.51
26866--26909	6	6.7	7	87	7	58	0	2	6	90	0.51
26866--26909	13	3.5	13	87	3	63	0	2	6	90	0.51
26866--26908	20	2.2	20	92	8	72	0	2	6	90	0.52
27986--28022	19	2.0	18	89	5	56	35	0	0	64	0.94
30437--30495	25	2.5	24	86	5	75	35	20	1	42	1.62
30505--30572	26	2.6	26	88	0	100	54	8	1	35	1.41
30766--30797	12	2.6	12	95	5	55	28	6	0	65	1.16
30936--30981	21	2.1	22	88	4	67	36	8	41	13	1.75
31339--31485	50	2.9	50	87	3	206	40	8	9	42	1.67
35070--35117	23	2.2	22	88	7	71	31	33	4	31	1.77
35326--35356	14	2.2	14	100	0	62	29	0	22	48	1.51
58570--58594	2	12.5	2	100	0	50	48	0	0	52	1.00
58821--58857	15	2.5	15	90	0	56	45	0	5	48	1.25
62533--62593	18	3.2	19	76	17	63	39	3	0	57	1.15
62560--62608	25	2.0	25	88	8	73	38	0	0	61	0.96
63109--63175	31	2.2	30	86	5	91	47	13	16	22	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63294--63372	31	2.5	31	97	0	149	32	17	11	37	1.86
63294--63435	31	4.6	31	82	3	126	29	16	13	40	1.86
64338--64386	3	16.3	3	95	0	89	34	0	0	65	0.93
64428--64564	31	4.5	30	79	5	132	40	11	16	32	1.84
64687--64749	29	2.1	29	85	5	81	22	19	9	49	1.76
64870--64952	41	2.0	41	90	0	130	38	16	12	32	1.86
65313--65391	32	2.5	32	89	0	122	17	41	25	15	1.88
65455--65572	33	3.6	33	83	4	123	11	34	42	11	1.77
65639--65781	32	4.6	32	74	16	106	13	36	38	11	1.81
65696--65783	32	2.7	33	82	8	108	14	32	37	14	1.87
66092--66142	26	1.9	26	88	4	75	35	7	17	39	1.79
67054--67091	11	3.5	11	85	10	51	57	2	0	39	1.12
67239--67277	18	2.2	18	95	0	69	23	7	20	48	1.75
67364--67394	16	1.9	16	93	0	53	9	16	9	64	1.48
69256--69309	16	3.4	16	78	0	63	59	1	7	31	1.36
70199--70277	33	2.3	35	82	10	108	31	24	13	30	1.94
70212--70283	33	2.2	33	92	0	117	36	27	9	26	1.88
70302--70343	18	2.3	18	91	0	66	28	9	28	33	1.88
70302--70358	18	3.2	18	82	9	64	28	10	28	33	1.90
70450--70510	27	2.3	27	91	0	95	37	6	37	18	1.76
74675--74751	30	2.6	30	87	6	104	37	35	11	15	1.84
76892--76926	18	1.9	18	94	0	61	5	22	5	65	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81136--81353	22	9.6	23	78	5	167	51	24	8	15	1.70
81134--81341	45	4.6	45	83	3	231	53	24	8	13	1.68
81214--81353	23	6.2	23	84	5	124	51	27	5	15	1.66
81213--81353	68	2.1	68	81	2	158	51	26	6	15	1.68
84099--84128	15	2.0	15	100	0	60	53	20	13	13	1.72
84965--84992	2	14.0	2	100	0	56	50	0	0	50	1.00
85069--85150	42	1.9	43	82	9	105	30	24	19	25	1.98
87274--87321	21	2.3	22	79	13	57	6	27	8	58	1.51
92225--92260	19	2.0	18	89	10	56	33	38	0	27	1.57
93046--93076	15	2.1	15	93	0	53	16	9	6	67	1.39
94465--94505	17	2.4	17	95	0	73	34	21	26	17	1.95
94664--94693	12	2.5	12	100	0	60	73	26	0	0	0.84

Tables:   1

The End!