Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012056.1 Corchorus capsularis cultivar CVL-1 contig12077, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31450

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
179--204
2
13.0
2
100
0
52
50
0
0
50
1.00
757--809
24
2.2
24
80
6
63
47
3
3
45
1.39
928--987
22
2.7
22
80
7
68
33
46
16
3
1.64
1546--1579
15
2.3
15
89
0
50
64
2
0
32
1.08
1669--1706
19
2.1
18
90
9
60
55
10
5
28
1.56
2034--2362
178
1.8
180
87
5
488
37
17
15
30
1.90
7112--7154
19
2.3
19
80
8
52
20
16
2
60
1.46
12130--12211
42
2.0
42
100
0
164
25
21
26
25
2.00
14688--14757
32
2.2
32
86
0
95
21
27
27
24
1.99
17608--17639
16
2.0
16
93
0
55
65
18
15
0
1.27
18656--18994
51
6.7
50
80
3
374
41
5
16
37
1.70
18656--19030
203
1.8
203
87
2
565
41
5
15
37
1.70
18656--18991
101
3.3
101
94
1
575
41
5
16
37
1.70
19700--19788
29
3.2
29
63
23
73
49
11
17
21
1.78
19689--19961
55
5.0
55
89
1
406
49
7
18
24
1.73
20198--20536
43
7.7
42
75
11
263
55
6
20
17
1.64
20194--20550
21
16.3
21
72
18
164
55
6
19
18
1.64
20415--20470
15
3.9
15
74
9
62
57
5
21
16
1.59
22806--22849
21
2.0
22
83
12
56
38
6
6
47
1.57
25535--25625
42
2.2
43
86
5
125
39
16
4
39
1.69
26735--26805
30
2.4
30
80
2
81
26
23
5
43
1.76
26886--26997
31
3.7
31
83
2
138
13
22
20
43
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28206--28247
15
2.8
15
82
17
52
54
9
2
33
1.46

Tables:   1

The End!