Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012057.1 Corchorus capsularis cultivar CVL-1 contig12078, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16631

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5032--5246
41
5.2
41
84
3
241
29
13
18
38
1.89
5032--5236
85
2.5
82
82
4
248
29
13
18
38
1.89
5342--5376
16
2.2
16
100
0
70
11
25
17
45
1.81
7493--7530
19
2.1
18
90
5
58
31
21
2
44
1.66
7509--7540
11
2.9
11
90
0
55
43
18
0
37
1.51
10462--10500
15
2.6
15
91
0
60
10
30
12
46
1.75
11939--11969
6
5.3
6
96
3
55
51
12
0
35
1.40
13314--13351
19
2.1
18
90
5
58
31
21
2
44
1.66
13330--13361
11
2.9
11
90
0
55
43
18
0
37
1.51
13513--13566
21
2.5
21
85
11
65
64
5
5
24
1.36
13525--13567
12
3.9
11
80
20
54
65
2
4
27
1.25

Tables:   1

The End!