Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012060.1 Corchorus capsularis cultivar CVL-1 contig12081, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67592

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40--92
25
2.0
27
82
13
67
20
5
15
58
1.57
766--832
23
3.2
23
60
24
56
41
8
17
31
1.81
2916--2972
7
8.1
7
76
7
53
36
1
0
61
1.07
10322--10353
15
2.1
15
100
0
64
18
6
21
53
1.67
14052--14147
38
2.5
39
79
3
104
48
8
20
21
1.75
14139--14211
32
2.3
32
81
6
85
49
6
23
20
1.73
14336--14388
16
3.3
16
75
19
65
54
3
22
18
1.59
14312--14433
32
3.6
32
77
17
129
50
3
25
21
1.64
14361--14469
40
2.7
40
94
0
182
52
2
22
22
1.60
14467--14530
16
3.7
17
72
22
53
57
3
20
18
1.53
14361--14485
40
3.2
38
88
7
164
52
3
23
21
1.62
14528--14589
32
1.9
33
93
3
108
51
4
17
25
1.65
14527--14621
26
3.4
26
83
12
93
52
4
16
26
1.62
14611--14702
27
3.4
27
87
1
121
58
2
22
16
1.48
18792--18852
30
2.0
30
83
0
77
32
14
16
36
1.89
22738--22763
6
4.3
6
100
0
52
53
0
0
46
1.00
29868--30559
347
2.0
344
89
2
1066
27
14
16
41
1.87
36260--36300
6
7.2
6
78
10
50
80
2
2
14
0.92
36260--36325
28
2.4
28
82
5
80
81
3
6
9
0.95
36259--36325
34
2.0
34
85
5
91
80
2
7
8
0.99
36260--36319
22
2.8
22
80
14
63
81
3
5
10
0.95
36303--36327
6
4.2
6
100
0
50
84
0
16
0
0.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40314--40452
72
1.9
72
86
0
197
33
16
26
23
1.95
43905--43938
6
5.8
6
86
6
52
14
0
0
85
0.60
43903--43938
11
3.2
11
88
7
54
13
0
0
86
0.58
50903--50962
32
1.9
31
89
3
93
36
6
23
33
1.81
63230--63295
33
2.1
33
86
8
93
9
27
39
24
1.85
64121--64161
20
2.0
20
95
0
73
48
21
0
29
1.50
65411--65451
2
20.5
2
94
0
73
51
0
0
48
1.00
67144--67174
1
31.0
1
100
0
62
100
0
0
0
0.00

Tables:   1

The End!