Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012061.1 Corchorus capsularis cultivar CVL-1 contig12082, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47547

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
308--356
13
3.6
13
84
10
71
46
12
2
38
1.53
359--712
196
1.8
197
95
0
647
41
12
8
37
1.74
737--916
97
1.9
97
97
0
342
39
11
7
41
1.69
4812--4961
73
2.0
74
84
1
194
20
23
18
38
1.93
5805--5936
72
1.9
69
82
7
167
25
12
12
48
1.77
6613--6647
2
17.5
2
100
0
70
48
0
0
51
1.00
10151--10211
31
1.9
32
93
3
106
34
13
18
34
1.89
10459--10501
2
21.5
2
95
0
77
48
0
2
48
1.14
10593--10906
124
2.6
123
92
2
524
37
9
1
52
1.42
13815--13883
24
2.9
23
82
4
75
2
28
11
56
1.49
16317--16341
10
2.5
10
100
0
50
24
8
20
48
1.76
36081--36156
31
2.5
31
95
0
134
31
6
31
30
1.83
36105--36154
15
3.3
15
72
5
55
36
4
30
30
1.76
36500--36621
59
2.1
59
90
0
190
29
6
23
40
1.80

Tables:   1

The End!