Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012064.1 Corchorus capsularis cultivar CVL-1 contig12085, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64739

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2979--3024
16
2.9
15
78
12
56
39
43
15
2
1.59
3771--3820
6
8.7
6
76
8
50
28
46
22
4
1.70
3774--3819
17
2.8
16
90
6
65
26
47
21
4
1.69
3809--3881
16
4.6
16
84
1
94
41
38
13
6
1.72
4436--4688
128
2.0
127
82
6
305
29
19
10
40
1.85
5817--5877
31
2.0
31
96
0
113
39
21
18
21
1.93
6389--6421
1
33.0
1
100
0
66
0
0
0
100
0.00
6441--6556
60
1.9
61
84
5
155
12
15
12
59
1.61
6494--6526
17
1.9
17
93
0
57
3
12
0
84
0.72
6747--6947
106
1.9
106
86
0
285
39
8
7
43
1.65
12215--12246
2
16.0
2
100
0
64
50
0
0
50
1.00
12917--12953
18
2.1
18
94
0
65
18
0
13
67
1.23
18143--18322
88
2.0
88
100
0
360
31
11
7
50
1.66
18151--18346
88
2.2
87
91
5
297
33
10
7
48
1.65
19085--19462
178
2.1
178
83
3
467
36
13
14
35
1.85
21701--21769
35
2.0
35
88
0
102
50
5
13
30
1.64
21713--21786
35
2.1
35
82
0
85
56
4
10
28
1.51
26463--26502
16
2.7
15
85
11
55
55
35
0
10
1.34
26740--26939
98
2.0
98
91
3
323
33
7
4
55
1.47
26839--27198
151
2.4
150
94
1
636
35
7
3
53
1.47
27013--27059
14
3.4
14
70
5
51
29
8
2
59
1.39
31890--31932
14
3.0
14
83
6
59
37
18
0
44
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31891--31930
15
2.8
14
88
3
53
37
20
0
42
1.52
33141--33182
22
2.0
22
85
4
59
45
11
4
38
1.62
34393--34708
166
1.9
166
86
3
449
37
14
17
31
1.90
45557--45594
6
6.5
6
96
3
69
31
0
13
55
1.38
46895--46928
3
11.7
3
87
6
52
61
0
2
35
1.11
46894--46928
17
2.1
17
94
0
61
60
0
2
37
1.12
47614--48015
115
3.5
115
91
0
619
28
22
26
23
1.99
48133--48216
42
2.0
42
83
4
107
32
25
19
23
1.97
48816--48844
14
2.1
14
100
0
58
65
20
13
0
1.26
51047--51349
110
2.6
111
83
7
356
24
25
23
25
2.00
51157--51380
124
1.8
124
83
0
295
25
25
23
25
2.00
52646--52693
23
2.1
23
84
3
62
52
2
8
37
1.44
53865--53895
11
2.7
11
95
5
53
90
0
9
0
0.46
53865--53895
14
2.3
13
94
5
53
90
0
9
0
0.46
55773--55809
11
3.3
11
92
3
56
70
0
29
0
0.88
56605--57848
35
35.7
35
86
3
1560
38
9
17
33
1.83
63051--63087
14
2.6
14
86
0
56
78
0
21
0
0.75
63046--63087
21
2.1
19
86
8
57
80
0
19
0
0.70
64462--64506
2
22.5
2
90
0
72
46
0
4
48
1.22
64670--64722
4
12.2
4
81
15
61
30
1
67
0
1.01
64676--64732
14
4.2
14
84
8
82
35
1
63
0
1.05
64672--64739
22
3.1
22
89
0
100
36
1
61
0
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64672--64739
8
8.2
8
81
12
57
36
1
61
0
1.05
64684--64739
4
14.0
4
90
0
58
39
1
58
0
1.08
64680--64736
18
3.2
18
84
0
78
36
1
61
0
1.07

Tables:   1

The End!