Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012065.1 Corchorus capsularis cultivar CVL-1 contig12086, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93409

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5154--5195
2
21.0
2
100
0
84
50
0
0
50
1.00
10499--10776
66
4.5
62
90
6
388
34
25
15
23
1.95
14651--14693
20
2.2
20
100
0
86
44
37
9
9
1.69
21439--21472
7
5.0
7
92
7
61
88
11
0
0
0.52
22820--22866
18
2.5
19
93
6
78
48
4
21
25
1.68
28286--28316
15
2.1
15
93
0
53
38
22
6
32
1.80
29778--29914
68
2.0
68
100
0
274
44
13
5
36
1.67
30309--30346
5
7.6
5
87
0
58
0
15
2
81
0.80
30309--30346
20
1.9
20
94
0
67
0
15
2
81
0.80
31144--31184
3
13.7
3
100
0
82
34
0
0
65
0.93
35130--35303
83
2.1
85
93
5
300
49
6
9
33
1.63
35348--35502
70
2.2
70
87
4
215
50
1
12
34
1.52
36368--36402
6
5.8
6
100
0
70
65
0
0
34
0.93
43882--44080
98
2.0
98
97
0
371
35
16
21
26
1.94
46794--46876
35
2.4
35
97
0
157
40
13
18
27
1.87
50373--50870
239
2.1
238
89
1
755
42
17
16
23
1.89
50373--50870
120
4.2
119
89
1
719
42
17
16
23
1.89
53506--53539
2
17.0
2
100
0
68
50
0
0
50
1.00
56934--57062
69
1.9
69
86
0
186
30
12
8
48
1.70
57461--57544
44
1.9
44
87
4
125
30
8
20
40
1.82
73459--73486
13
2.2
13
100
0
56
21
17
35
25
1.95
78364--78389
4
6.5
4
100
0
52
0
23
0
76
0.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78683--78781
49
2.0
49
90
3
155
39
15
11
34
1.82
79227--79276
2
27.5
2
77
18
56
50
0
0
50
1.00
79228--79279
21
2.5
20
82
11
70
50
0
0
50
1.00
81805--81851
21
2.2
21
96
0
85
40
38
6
14
1.72
85231--85273
23
2.0
21
81
9
50
62
4
9
23
1.44
85564--85596
16
2.1
16
94
0
57
33
3
0
63
1.10
91595--91623
3
9.7
3
100
0
58
68
0
0
31
0.89

Tables:   1

The End!