Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012067.1 Corchorus capsularis cultivar CVL-1 contig12088, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72674

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
449--478
10
3.0
10
95
0
51
56
10
10
23
1.62
4179--4217
10
3.8
10
83
6
51
20
2
20
56
1.54
6364--6420
21
2.8
20
89
5
87
29
14
15
40
1.87
6397--6450
27
2.0
27
85
0
72
29
18
14
37
1.91
9933--9970
20
1.9
20
88
0
58
21
10
44
23
1.83
30494--30527
11
3.0
11
91
4
50
14
23
17
44
1.86
30861--30921
26
2.4
26
74
17
65
14
19
13
52
1.74
34136--34172
19
2.0
18
89
5
56
29
21
8
40
1.82
35477--35507
16
1.9
16
93
0
53
38
29
6
25
1.81
35477--35515
16
2.4
16
86
0
51
33
38
5
23
1.77
39114--39190
29
2.7
28
82
8
75
12
14
32
40
1.84
49921--49963
23
1.9
22
85
4
59
72
6
2
18
1.19
52406--52583
51
3.5
50
84
4
198
41
10
10
37
1.75
53435--53790
55
6.5
55
94
0
570
46
7
19
25
1.76
53802--53932
37
3.6
37
89
5
189
48
6
16
29
1.70
54178--54263
21
4.1
20
81
10
75
52
5
20
20
1.67
54447--54478
11
2.9
11
100
0
64
65
0
25
9
1.22
60118--60154
19
2.0
18
89
5
56
29
21
8
40
1.82
66561--66590
6
5.0
6
100
0
60
66
16
0
16
1.25
72147--72188
16
2.6
16
88
0
57
33
45
16
4
1.69

Tables:   1

The End!