Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012068.1 Corchorus capsularis cultivar CVL-1 contig12089, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31266

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2715--2743
13
2.1
14
93
6
51
20
27
10
41
1.85
2942--3044
40
2.7
40
89
4
149
44
12
16
26
1.83
5536--5576
16
2.3
18
84
12
50
56
4
7
31
1.48
6030--6085
14
4.2
13
77
6
58
44
7
12
35
1.70
6712--6744
13
2.6
13
90
4
50
87
0
9
3
0.63
9241--9441
65
3.1
65
90
0
303
24
27
25
21
1.99
9578--9654
36
2.1
36
88
4
111
38
10
25
24
1.87
9732--9870
32
4.5
32
68
20
114
34
16
25
23
1.95
9723--9940
92
2.4
92
97
0
409
34
14
25
25
1.94
9853--9990
60
2.3
59
88
2
222
34
13
24
26
1.93
10044--10159
56
2.1
56
87
6
164
25
17
17
40
1.90
13622--13650
13
2.1
14
93
6
51
20
27
10
41
1.85
13854--13953
40
2.6
40
88
4
143
44
12
17
27
1.83
21636--21689
21
2.7
20
85
8
74
64
11
14
9
1.48
22337--22369
15
2.2
15
94
0
57
45
6
0
48
1.27
26732--27231
167
3.0
163
81
6
576
38
16
14
31
1.88
29773--29849
39
2.0
39
97
0
145
35
20
10
33
1.87

Tables:   1

The End!