Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012069.1 Corchorus capsularis cultivar CVL-1 contig12090, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5495
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.31


Found at i:4692 original size:19 final size:18

Alignment explanation


    Indices: 4659--4694  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       4649 TTGAAATAAT

                              
       4659 TCTTCAATGATCTTCAAA
          1 TCTTCAATGATCTTCAAA

                     *        
       4677 TCTTCAAATTATCTTCAA
          1 TCTTC-AATGATCTTCAA

       4695 GAAATCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    5  0.31
  19   11  0.69

ACGTcount: A:0.33, C:0.22, G:0.03, T:0.42


Consensus pattern (18 bp):   
TCTTCAATGATCTTCAAA
Done.