Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012070.1 Corchorus capsularis cultivar CVL-1 contig12091, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10548

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62--426
113
3.2
112
80
7
450
33
20
21
23
1.97
13--426
113
3.7
111
76
7
363
35
20
21
22
1.96
500--826
27
11.3
29
68
22
124
39
8
0
51
1.36
498--720
13
15.5
13
66
19
72
38
8
0
52
1.32
523--822
30
10.3
29
67
23
118
39
8
0
52
1.37
497--873
44
8.6
44
82
5
446
39
8
0
51
1.39
1054--1081
7
4.0
7
100
0
56
0
57
0
42
0.99
3062--3114
18
2.9
18
81
10
63
30
11
32
26
1.91
3095--3140
18
2.5
19
86
6
69
32
6
28
32
1.83
4786--4972
57
3.3
57
98
0
356
34
13
26
25
1.94
4891--5055
84
2.0
84
82
2
206
32
15
27
24
1.96
7652--7706
18
3.1
18
83
0
74
30
9
30
29
1.88
7660--7741
18
4.6
18
79
10
78
31
8
29
30
1.87
8227--8348
16
7.7
16
82
5
149
8
16
38
36
1.78
8227--8348
32
3.8
32
87
5
167
8
16
38
36
1.78
8575--8634
29
2.1
29
100
0
120
13
13
31
41
1.83
9200--9302
16
6.4
16
75
4
100
10
21
35
32
1.88
9198--9302
32
3.3
31
81
2
111
10
21
35
32
1.88
9198--9302
48
2.2
48
78
13
117
10
21
35
32
1.88
9949--9982
16
2.2
16
89
5
52
58
8
2
29
1.43

Tables:   1

The End!