Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012071.1 Corchorus capsularis cultivar CVL-1 contig12092, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17478

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81--188
32
3.4
32
84
2
137
10
19
36
34
1.86
52--188
48
2.9
47
76
12
134
10
18
34
35
1.86
81--180
16
6.2
16
75
6
87
10
18
37
35
1.84
387--416
15
1.9
16
93
6
53
46
40
13
0
1.43
484--573
16
5.7
16
78
1
92
48
30
14
6
1.69
485--573
32
2.8
32
89
1
135
49
30
13
6
1.68
479--573
48
2.0
47
81
6
111
48
30
13
7
1.70
6905--6995
40
2.3
40
98
0
173
31
8
23
36
1.85
7434--7476
11
3.9
11
90
0
68
46
6
4
41
1.51
7430--7476
22
2.1
22
96
0
85
46
6
4
42
1.48
10223--10447
36
6.4
36
88
4
307
28
23
8
40
1.83
10450--10568
36
3.3
35
81
5
103
21
15
13
48
1.80
10532--10940
38
10.5
40
87
7
412
23
18
10
47
1.79
10505--11153
78
8.2
79
82
10
740
22
18
10
47
1.80
10532--11153
41
15.6
40
81
11
574
22
18
10
47
1.80
10778--11109
169
2.0
163
84
10
433
23
18
10
47
1.79
12946--12979
11
3.2
10
84
15
50
50
17
2
29
1.61
14927--14966
20
2.1
19
86
9
55
40
5
22
32
1.76
15730--16229
67
7.5
66
77
8
453
41
16
19
22
1.91
15844--16237
133
2.9
132
84
4
490
43
16
18
21
1.88
15800--16239
200
2.2
200
82
6
527
42
17
18
21
1.89
16242--16283
6
6.8
6
97
2
75
16
2
0
80
0.81

Tables:   1

The End!