Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012072.1 Corchorus capsularis cultivar CVL-1 contig12093, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37698

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3677--3837
38
4.2
38
92
1
236
50
8
16
23
1.73
3860--3912
27
2.0
26
85
3
70
45
5
20
28
1.74
3919--4005
32
2.7
32
87
3
120
55
3
19
21
1.58
4131--4163
14
2.5
13
90
9
57
54
6
18
21
1.64
4169--4196
13
2.2
13
100
0
56
64
0
21
14
1.29
4276--4379
16
6.2
16
65
20
61
50
2
21
25
1.63
11544--11593
26
2.0
25
92
4
82
28
8
28
36
1.85
12864--12928
32
2.0
32
90
0
103
24
16
9
49
1.75
19675--19717
11
3.8
11
82
17
61
30
53
16
0
1.43
19672--19727
23
2.4
23
96
0
103
35
46
17
0
1.49
19716--19773
16
3.6
16
90
4
82
37
41
15
5
1.70
19672--19726
6
9.5
6
74
21
55
34
47
18
0
1.49
19953--20042
31
2.9
30
75
6
74
30
6
8
54
1.57
20547--20635
16
5.6
16
89
7
146
39
40
14
5
1.70
20547--20635
31
2.8
32
91
8
155
39
40
14
5
1.70
25179--25220
20
2.1
20
100
0
84
52
4
4
38
1.44
25182--25228
20
2.4
20
92
3
78
51
6
6
36
1.53
25681--25783
39
2.6
39
95
3
181
45
25
8
20
1.79
29572--29874
38
8.0
39
88
5
401
25
17
7
49
1.73
29609--29707
19
5.2
19
61
9
58
25
15
7
52
1.67
29568--29885
114
2.8
111
88
3
451
25
17
8
48
1.74
33169--33209
5
8.2
5
87
12
50
17
0
0
82
0.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33163--33209
21
2.3
20
82
13
60
14
0
2
82
0.75
33171--33206
16
2.2
16
90
9
56
16
0
0
83
0.65
34754--34838
27
3.1
27
64
12
75
15
34
15
35
1.89

Tables:   1

The End!