Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012073.1 Corchorus capsularis cultivar CVL-1 contig12094, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30039

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
360--651
109
2.7
109
90
5
448
48
1
11
38
1.49
3976--4013
20
1.9
20
88
0
58
76
5
18
0
0.97
6295--6454
31
5.5
31
78
13
149
17
21
26
33
1.96
6343--6445
53
1.9
53
90
0
161
17
19
26
36
1.94
10255--10285
12
2.6
12
89
0
53
22
41
0
35
1.54
23985--24156
22
7.8
22
66
9
73
34
14
11
40
1.81
24241--24547
22
14.1
22
68
14
120
36
14
9
39
1.78
24293--24378
23
3.7
23
83
4
102
39
11
6
41
1.68
24252--24547
44
6.8
43
74
14
189
36
13
9
40
1.78
24671--24979
22
13.6
22
68
16
89
34
16
9
38
1.81
24855--24979
44
2.8
44
76
15
114
38
19
8
34
1.81
25015--25101
22
3.9
21
73
15
68
40
20
9
29
1.84
25205--25242
19
2.0
20
85
15
53
63
2
5
28
1.30
25541--25608
31
2.2
32
84
10
95
51
4
13
30
1.60

Tables:   1

The End!