Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012074.1 Corchorus capsularis cultivar CVL-1 contig12095, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47407

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1397--1437
20
2.0
20
95
0
73
29
0
21
48
1.50
1470--1510
20
2.0
20
95
0
73
29
0
21
48
1.50
1378--1521
73
2.0
72
95
4
263
27
8
18
46
1.77
2543--2577
17
2.1
17
100
0
70
77
0
11
11
1.00
4836--4908
36
2.0
36
100
0
146
38
20
10
30
1.87
8576--8687
59
1.9
59
81
0
134
28
6
26
38
1.81
10304--10328
10
2.5
10
100
0
50
32
0
8
60
1.26
11762--11793
12
2.7
12
95
0
55
3
15
28
53
1.57
12170--12212
20
2.1
21
86
4
61
20
18
20
39
1.93
12200--12282
42
2.0
43
85
7
116
36
24
16
22
1.95
12726--12752
14
1.9
14
100
0
54
62
0
0
37
0.95
12775--12815
18
2.3
18
80
16
50
34
4
4
56
1.42
13949--13984
10
3.6
10
100
0
72
38
22
8
30
1.83
15990--16043
12
4.4
12
95
4
99
24
24
16
35
1.95
15990--16043
25
2.2
24
96
3
99
24
24
16
35
1.95
16099--16154
28
2.0
28
89
0
85
53
14
8
23
1.68
19978--20019
22
1.9
22
95
0
75
38
23
16
21
1.93
20001--20097
31
3.2
31
83
2
97
31
28
22
16
1.96
20011--20107
30
3.2
30
82
2
113
34
27
22
15
1.94
34822--35113
145
2.0
145
97
0
548
28
19
16
35
1.94
35237--35267
2
15.5
2
100
0
62
48
0
0
51
1.00
43645--43679
16
2.3
15
95
5
61
42
11
11
34
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46857--46934
40
2.0
40
89
0
120
35
21
19
23
1.96

Tables:   1

The End!