genome.fa.s12078.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012078.1 Corchorus capsularis cultivar CVL-1 contig12099, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117581

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
212--293	22	3.7	22	78	3	76	36	13	12	37	1.82
238--339	23	4.5	23	85	1	109	39	14	8	37	1.78
406--529	44	2.9	42	77	11	126	37	12	10	39	1.78
391--549	22	7.3	22	72	8	103	34	13	10	41	1.78
655--846	22	8.8	22	71	14	94	32	14	10	41	1.81
630--846	86	2.5	85	81	10	219	32	14	10	42	1.80
630--851	44	5.1	44	71	13	156	32	14	10	42	1.79
953--1013	24	2.7	23	78	9	63	36	16	9	37	1.82
1049--1190	22	6.3	22	76	11	117	38	19	9	32	1.83
1049--1181	68	2.0	66	80	5	151	37	19	9	33	1.85
1587--1629	19	2.2	20	84	16	54	62	0	9	27	1.25
1941--2006	31	2.1	31	88	5	98	46	6	21	25	1.74
2035--2067	2	16.0	2	93	6	57	48	0	3	48	1.17
3288--3335	22	2.2	22	84	0	60	18	25	27	29	1.98
7363--7387	13	1.9	13	100	0	50	40	16	12	32	1.84
17496--17542	2	23.5	2	95	0	85	48	2	0	48	1.13
23484--23669	90	2.0	91	90	3	293	38	14	25	20	1.91
39773--39797	2	12.5	2	100	0	50	52	0	0	48	1.00
44388--44421	2	17.0	2	100	0	68	0	50	0	50	1.00
58482--58516	3	11.7	3	100	0	70	68	0	0	31	0.90
59293--59321	14	2.1	14	100	0	58	37	0	20	41	1.53
75158--75194	19	1.9	19	88	0	56	40	10	13	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76251--76319	28	2.4	29	85	4	97	24	26	14	34	1.94
76463--76514	21	2.6	21	84	6	72	21	3	25	50	1.65
78445--78593	72	2.1	72	86	5	203	42	25	8	24	1.82
79269--79337	28	2.4	29	88	4	97	23	28	14	33	1.94
79987--80011	13	1.9	13	100	0	50	44	0	0	56	0.99
80147--80222	40	1.9	40	94	0	134	53	10	3	31	1.53
81493--81533	22	2.0	22	90	9	68	2	7	12	78	1.06
84702--84739	20	1.9	20	94	0	67	7	21	13	57	1.60
85394--85424	4	7.8	4	100	0	62	51	22	0	25	1.48
94129--94267	60	2.3	60	82	3	172	27	16	17	38	1.91
94130--94287	60	2.6	60	80	7	169	28	17	15	37	1.91
95932--95993	2	34.0	2	75	18	64	46	0	0	53	1.00
97516--97727	105	2.0	105	99	0	415	26	12	21	39	1.89
98069--98102	16	2.1	16	100	0	68	11	23	17	47	1.81
105563--105602	2	20.5	2	84	5	55	45	5	0	50	1.23
106659--106714	3	18.7	3	100	0	112	32	0	33	33	1.58
107780--107822	12	3.5	12	90	6	68	25	20	16	37	1.93
110029--110066	2	18.5	2	89	5	58	47	0	5	47	1.24
112596--112758	31	5.5	31	75	12	119	18	22	25	33	1.96
112647--112749	53	1.9	53	92	0	170	18	19	25	36	1.94
114853--114882	15	2.0	15	93	0	51	26	16	13	43	1.85
117337--117392	25	2.3	23	87	6	76	32	21	0	46	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117401--117454	26	2.1	26	89	0	81	51	7	1	38	1.41
117401--117444	15	3.2	15	72	24	51	54	9	0	36	1.32

Tables:   1

The End!