Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012079.1 Corchorus capsularis cultivar CVL-1 contig12100, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22384

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
412--437
10
2.6
10
100
0
52
92
0
7
0
0.39
412--440
11
2.7
11
94
5
51
89
0
10
0
0.48
992--1049
19
2.9
19
79
5
53
39
8
18
32
1.82
6590--6659
2
36.5
2
73
18
51
41
4
0
54
1.20
7047--7136
45
2.0
45
91
4
146
27
23
16
32
1.96
8303--8356
27
2.2
24
78
15
56
20
33
20
25
1.97
9802--9853
17
3.1
16
78
13
59
61
5
0
32
1.20
10169--10227
29
2.1
29
87
9
86
38
8
8
44
1.65
10203--10313
56
2.0
55
91
8
181
37
6
10
45
1.65
11810--11848
17
2.3
17
95
0
69
41
0
23
35
1.55
12058--12094
2
18.0
2
94
5
65
48
0
2
48
1.15
19053--19081
9
3.3
9
95
4
51
48
0
0
51
1.00

Tables:   1

The End!