Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012084.1 Corchorus capsularis cultivar CVL-1 contig12105, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46415

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4387--4412
2
13.0
2
100
0
52
50
0
0
50
1.00
4538--4568
9
3.6
9
95
4
55
0
19
0
80
0.71
10234--10265
17
1.9
17
93
6
57
40
0
40
18
1.51
10830--10868
6
6.2
6
85
8
51
15
17
2
64
1.41
11427--11534
43
2.7
40
84
12
132
27
17
10
44
1.81
11463--11550
43
2.0
44
93
2
151
30
18
10
40
1.83
15244--15318
26
2.8
26
82
13
100
37
29
16
17
1.91
19967--20198
59
3.9
60
75
9
204
36
12
24
26
1.92
19967--20169
60
3.4
60
80
6
223
35
12
25
26
1.92
20221--20344
56
2.2
56
88
2
178
25
17
20
36
1.95
23579--23678
37
2.6
39
81
10
116
44
10
16
30
1.80
34958--35007
13
3.6
14
78
8
57
60
2
10
28
1.40
40938--40983
16
2.9
16
100
0
92
0
13
39
47
1.42
40970--41007
6
6.5
6
84
6
51
2
21
47
28
1.64
41754--41787
17
1.9
18
88
5
52
2
20
52
23
1.60
41777--41819
16
2.7
16
88
0
59
4
16
44
34
1.68
44141--44165
13
1.9
13
100
0
50
88
0
12
0
0.53
46379--46414
2
18.0
2
100
0
72
50
0
0
50
1.00

Tables:   1

The End!