Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012085.1 Corchorus capsularis cultivar CVL-1 contig12106, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39129

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
137--335
41
4.8
40
72
10
143
39
27
11
21
1.87
137--337
84
2.4
84
85
4
259
39
27
10
22
1.87
1643--1683
21
2.0
21
100
0
82
34
9
14
41
1.79
6233--6326
29
3.1
28
76
15
91
35
27
14
22
1.94
8277--8336
26
2.2
28
85
5
79
30
30
25
15
1.95
8405--8445
21
2.0
21
100
0
82
19
14
34
31
1.92
8593--8625
17
1.9
17
93
0
57
30
6
33
30
1.82
12248--12302
21
2.6
22
83
8
62
23
18
16
41
1.89
14923--14947
9
2.8
9
100
0
50
20
12
56
12
1.67
15206--15500
135
2.2
135
86
5
418
19
28
25
26
1.99
15903--16160
104
2.5
105
92
4
425
29
20
30
19
1.97
20880--20920
21
2.0
21
85
0
55
41
2
12
43
1.55
20943--21036
49
1.9
49
84
4
127
40
5
14
39
1.69
20865--21088
51
4.4
50
75
8
150
39
3
16
41
1.64
21630--22094
35
13.7
34
81
9
515
38
9
18
33
1.83
21781--21845
31
2.3
27
76
19
76
35
10
18
35
1.86
21840--21933
8
11.0
8
69
10
53
40
7
15
36
1.76
25104--25272
30
5.9
30
73
14
115
17
23
26
33
1.96
25183--25230
22
2.3
21
86
10
64
20
18
22
37
1.94
26782--26811
15
2.0
15
93
0
51
70
6
0
23
1.11
28353--28486
31
4.4
30
75
9
110
44
19
15
20
1.87
28567--28653
28
3.0
28
74
11
86
14
9
24
51
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29765--29869
32
3.2
33
77
11
110
12
37
37
13
1.82
29963--30058
33
2.9
32
79
10
106
15
41
31
11
1.83
30094--30252
33
4.9
33
89
3
216
11
28
42
16
1.84
30225--30394
86
2.0
86
97
0
322
35
15
34
14
1.88
30778--30806
2
14.5
2
100
0
58
48
0
0
51
1.00
34209--34248
16
2.5
16
88
8
55
55
25
12
7
1.63
34209--34264
16
3.5
15
81
13
51
53
23
12
10
1.69
34221--34271
16
3.1
17
80
11
61
54
23
11
9
1.66
35205--35268
20
3.3
19
87
8
85
31
17
32
18
1.94

Tables:   1

The End!