Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012092.1 Corchorus capsularis cultivar CVL-1 contig12113, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54955

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5141--5286
53
2.7
54
85
6
197
30
17
13
38
1.89
5143--5286
56
2.7
53
86
3
198
30
18
13
38
1.88
6355--6462
53
2.0
53
100
0
216
41
16
20
21
1.90
7075--7100
2
13.0
2
100
0
52
50
0
0
50
1.00
7219--7368
59
2.6
56
81
9
160
29
16
9
45
1.78
10395--10423
2
15.0
2
92
7
51
51
0
0
48
1.00
12806--12837
14
2.1
16
88
11
50
59
6
0
34
1.23
23252--23291
20
2.0
21
95
5
73
32
27
20
20
1.97
24785--24855
28
2.5
29
97
2
135
50
14
0
35
1.43
27855--27904
25
2.0
26
84
4
66
28
10
4
58
1.49
41292--41340
2
24.5
2
100
0
98
0
48
0
51
1.00
42875--42990
58
2.0
58
89
0
178
31
12
12
44
1.78
46975--47020
23
2.0
23
100
0
92
39
34
17
8
1.80
54208--54250
17
2.7
17
82
13
56
48
2
32
16
1.58

Tables:   1

The End!