Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012093.1 Corchorus capsularis cultivar CVL-1 contig12114, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58751

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
436--505
33
2.1
34
91
5
115
30
11
18
40
1.86
5690--5722
10
3.3
10
91
0
57
60
24
0
15
1.35
8825--8897
31
2.4
31
84
9
87
5
38
4
52
1.44
15071--15106
19
1.9
18
88
5
54
41
2
22
33
1.68
16388--16421
16
2.2
16
89
5
52
29
2
5
61
1.34
18336--18479
50
2.9
49
89
5
218
21
12
34
31
1.91
19869--19908
21
1.9
21
94
0
71
57
10
20
12
1.63
24579--24629
21
2.4
21
75
12
59
54
1
37
5
1.36
26862--27005
50
2.9
50
91
1
236
22
13
33
30
1.93
36143--36228
43
2.0
44
86
4
120
37
8
12
41
1.73
36511--36787
67
3.9
67
69
15
214
38
2
18
40
1.65
36817--36910
47
2.0
47
100
0
188
29
6
10
53
1.60
36824--36922
47
2.1
47
90
0
153
30
8
11
50
1.67
39752--39791
14
2.9
14
96
3
73
30
20
0
50
1.49
39888--40162
109
2.5
109
92
4
437
37
10
2
49
1.50
43515--43993
167
2.9
164
82
6
579
30
15
15
38
1.89
44155--44187
17
1.9
17
100
0
66
39
0
6
54
1.25
48892--48925
2
17.0
2
100
0
68
50
50
0
0
1.00
55244--55273
15
1.9
16
93
6
53
6
33
6
53
1.53
56226--56254
4
7.5
4
92
7
51
0
20
0
79
0.74
56226--56289
7
8.4
7
79
17
58
3
20
1
75
1.03
56908--56957
25
2.1
24
82
14
59
18
26
0
56
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58710--58750
19
2.1
20
86
4
57
21
0
7
70
1.11

Tables:   1

The End!