Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012095.1 Corchorus capsularis cultivar CVL-1 contig12116, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33883

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
558--819
101
2.6
101
89
3
402
36
16
4
42
1.68
564--819
51
5.1
50
74
7
230
36
16
4
42
1.67
805--843
20
2.0
20
89
0
60
35
15
15
33
1.89
3541--3646
27
3.9
27
87
3
133
36
24
21
16
1.94
12830--12870
21
2.1
18
86
13
55
36
12
26
24
1.91
14869--14927
30
2.0
30
86
6
84
23
28
16
30
1.97
15270--15378
33
3.3
33
94
0
191
44
17
11
27
1.82
15270--15409
66
2.1
66
82
2
165
42
18
10
29
1.83
15404--15508
33
3.2
32
82
5
120
44
21
8
24
1.80
17061--17094
8
4.1
8
85
7
50
23
2
14
58
1.50
22970--23019
26
2.0
25
88
11
75
68
10
4
18
1.34
23006--23049
6
7.5
6
97
2
81
54
13
0
31
1.39
25502--25526
10
2.5
10
100
0
50
8
0
0
92
0.40
26532--26600
30
2.3
30
87
5
95
11
27
39
21
1.88
28154--28292
33
4.2
33
88
5
210
46
17
10
25
1.80
28318--28421
33
3.2
33
79
2
120
45
19
9
25
1.81
31058--31206
33
4.6
33
90
2
214
41
19
10
28
1.84
31085--31229
66
2.2
66
83
2
175
42
20
10
26
1.84
32689--32718
13
2.2
14
94
5
53
10
0
0
90
0.47
32689--32718
14
2.1
15
93
6
53
10
0
0
90
0.47

Tables:   1

The End!