genome.fa.s12097.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012097.1 Corchorus capsularis cultivar CVL-1 contig12118, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21363

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1499--1528	15	1.9	16	93	6	53	6	20	13	60	1.55
8338--8760	92	4.6	92	97	0	801	38	16	19	25	1.93
12708--12770	27	2.3	27	86	0	99	44	19	17	19	1.87
12545--12979	224	1.9	224	96	0	798	44	16	13	25	1.84
12913--12978	27	2.4	27	79	2	69	48	27	10	13	1.75
13220--14096	63	14.7	58	78	10	525	40	15	20	23	1.91
13451--13548	45	2.2	46	88	1	144	41	17	21	19	1.90
13385--13604	108	2.0	108	96	0	404	40	15	21	21	1.91
13338--13663	171	1.9	166	86	5	458	40	16	21	22	1.91
13493--13940	191	2.4	189	83	5	544	40	14	20	23	1.90
13882--14098	57	3.8	57	84	0	272	38	17	20	23	1.93
13882--14105	115	2.0	115	85	0	306	38	16	20	24	1.93
14267--14455	103	1.8	103	88	0	288	43	18	16	21	1.88
14376--14697	35	9.1	35	75	8	233	42	19	19	18	1.89
14665--14858	71	2.7	71	83	3	250	40	21	14	23	1.90
14852--14953	36	2.9	35	80	2	132	42	26	16	14	1.87
14838--14945	36	3.0	36	78	5	121	41	26	13	17	1.87
14926--15119	71	2.7	71	89	3	311	38	21	18	22	1.93
14592--15214	261	2.4	261	91	0	971	40	22	17	20	1.91
15099--15206	36	3.0	36	79	2	137	41	26	13	17	1.87
16255--16314	6	9.7	6	87	7	84	3	15	0	81	0.81
16268--16314	6	7.8	6	95	0	85	2	14	0	82	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16391--16432	22	1.9	22	85	9	59	33	14	2	50	1.56
17028--17075	14	3.5	14	76	23	57	37	12	8	41	1.73
17143--17207	12	5.6	11	75	10	51	3	18	0	78	0.88
17147--17208	24	2.7	24	76	11	67	4	17	0	77	0.94
17144--17207	23	2.6	24	85	7	76	3	17	0	79	0.85
17144--17207	27	2.4	26	80	14	69	3	17	0	79	0.85

Tables:   1

The End!