genome.fa.s12098.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012098.1 Corchorus capsularis cultivar CVL-1 contig12119, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29291

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327--360	14	2.4	14	90	0	50	50	14	8	26	1.72
694--789	27	3.5	27	84	1	120	42	25	14	17	1.87
1152--1178	2	13.5	2	100	0	54	48	0	0	51	1.00
1311--1385	2	39.5	2	72	19	54	45	4	0	50	1.20
1298--1375	41	2.0	38	87	9	113	46	6	0	47	1.28
1773--1862	45	2.0	45	93	0	153	25	22	18	33	1.97
2706--2735	15	2.1	15	93	6	53	86	13	0	0	0.57
14242--14591	175	2.0	175	98	0	682	23	23	17	36	1.95
21622--21656	6	5.8	6	86	0	52	0	2	17	80	0.84
21623--21662	12	3.4	12	89	3	55	0	2	20	77	0.88
25524--25772	35	6.9	35	75	8	214	35	15	10	38	1.81
25524--25764	70	3.4	70	82	5	243	36	15	9	38	1.81
25600--25694	19	5.3	19	68	14	67	35	14	10	38	1.81
25595--25642	16	2.8	17	78	9	53	37	16	4	41	1.68
25877--25915	18	2.2	18	95	0	69	38	17	5	38	1.72
25838--26141	61	5.0	61	94	0	536	36	18	7	37	1.80
25938--25976	18	2.2	18	90	0	60	35	17	10	35	1.84
25999--26098	18	5.2	18	71	19	85	37	20	7	36	1.79
26228--26286	19	3.3	19	67	13	52	35	18	10	35	1.85
26215--26289	35	2.1	35	95	0	132	37	20	8	34	1.82
26209--26267	16	3.5	16	71	13	55	37	18	5	38	1.73
26078--26417	43	7.8	43	75	13	318	35	20	7	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26438--26494	21	2.9	21	79	7	66	40	17	5	36	1.72
27334--27457	51	2.4	51	91	2	196	36	12	5	45	1.66

Tables:   1

The End!