genome.fa.s12099.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012099.1 Corchorus capsularis cultivar CVL-1 contig12120, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33968

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2074--2142	28	2.6	26	80	15	70	15	27	1	55	1.50
2267--2294	14	2.0	14	100	0	56	21	21	7	50	1.72
2268--2311	14	3.2	13	87	6	52	20	18	9	52	1.72
2369--2466	26	3.6	25	75	20	97	26	17	4	52	1.62
2396--2478	32	2.5	33	83	13	116	24	16	3	55	1.57
2577--2654	28	2.6	30	74	10	70	19	20	3	56	1.57
2783--2880	38	2.5	39	75	8	101	25	22	5	46	1.72
6377--6412	15	2.3	16	95	4	65	0	16	0	83	0.65
13051--13533	241	2.0	241	99	0	957	21	23	19	35	1.96
14408--14633	63	3.5	62	78	9	220	42	22	11	24	1.85
18115--18363	35	6.9	35	78	7	239	35	15	10	38	1.82
18115--18377	70	3.7	70	82	5	276	36	15	9	38	1.81
18191--18285	19	5.3	19	65	14	67	35	14	10	38	1.81
18115--18233	16	6.8	17	67	13	64	36	14	8	41	1.76
18115--18363	105	2.3	108	81	4	279	35	15	10	38	1.82
18416--18531	43	2.7	43	90	2	180	35	18	7	38	1.79
18511--18549	18	2.2	18	95	0	69	35	20	7	35	1.81
18468--18952	61	8.0	61	66	18	255	36	18	7	37	1.80
18429--18635	104	2.0	104	94	0	360	35	18	8	38	1.81
18528--18964	43	10.9	38	69	19	175	35	18	8	37	1.80
18529--18697	43	3.9	43	88	0	248	33	20	8	37	1.82
18529--18697	87	2.0	87	89	1	259	33	20	8	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18463--18934	239	2.0	230	83	7	577	36	18	7	37	1.80
18692--18786	18	5.2	18	73	19	81	38	17	5	37	1.73
18660--18802	56	2.6	56	85	5	195	37	19	6	35	1.79
18768--18964	43	4.8	43	77	9	221	36	17	8	37	1.81
18766--18932	78	2.2	78	83	1	210	37	17	8	36	1.80
18985--19041	21	2.9	21	79	7	66	40	17	5	36	1.72
18922--19047	55	2.3	55	81	1	153	36	17	5	40	1.73
19877--19975	19	5.2	19	68	11	58	36	13	5	45	1.65
19860--19972	20	5.8	20	70	16	67	37	13	6	43	1.69
22187--22263	24	3.1	24	68	17	75	41	3	16	37	1.67
22167--22263	51	1.9	51	93	0	167	41	3	17	38	1.65
27988--28080	33	2.8	33	80	0	105	25	10	20	43	1.84
28109--28214	33	3.2	33	85	5	151	28	11	17	42	1.84
28593--28651	30	2.0	30	90	6	93	30	16	30	22	1.96
31211--31289	41	1.9	41	84	5	106	51	5	20	22	1.66
31298--31343	22	2.1	22	84	8	58	56	4	19	19	1.58
31354--31788	22	19.1	22	68	19	200	51	6	20	22	1.70
31354--31788	43	10.6	43	78	12	405	51	6	20	22	1.70
31286--31532	117	2.1	117	94	3	435	53	5	19	20	1.65
31471--31729	21	12.5	21	74	12	196	48	7	21	22	1.75
31415--31837	78	5.3	78	76	14	380	51	6	20	21	1.70
31635--31788	42	3.6	43	83	4	159	51	5	20	23	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31769--31824	22	2.5	22	82	5	51	57	3	17	21	1.55
31713--31807	44	2.2	43	81	5	109	55	4	17	22	1.59
31747--31817	29	2.4	29	86	9	92	56	2	19	21	1.55
31787--31834	22	2.2	22	85	3	62	58	6	16	18	1.59
31919--31984	27	2.5	25	75	17	62	60	1	21	16	1.43
33314--33341	13	2.2	13	100	0	56	21	46	17	14	1.84
33598--33622	8	3.1	8	100	0	50	24	12	0	64	1.27

Tables:   1

The End!