Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01012104.1 Corchorus capsularis cultivar CVL-1 contig12125, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 999

Length: 1665
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29


Found at i:952 original size:13 final size:13

Alignment explanation


    Indices: 934--981  Score: 87
    Period size: 13  Copynumber: 3.7  Consensus size: 13

        924 AATCTAAATC

                   *     
        934 TAAAGCAGATTAA
          1 TAAAGCAAATTAA

                         
        947 TAAAGCAAATTAA
          1 TAAAGCAAATTAA

                         
        960 TAAAGCAAATTAA
          1 TAAAGCAAATTAA

                     
        973 TAAAGCAAA
          1 TAAAGCAAA

        982 CAATAATTAT


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  13   34  1.00

ACGTcount: A:0.60, C:0.08, G:0.10, T:0.21


Consensus pattern (13 bp):   
TAAAGCAAATTAA
Done.