Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012105.1 Corchorus capsularis cultivar CVL-1 contig12126, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49680

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
496--551
20
2.8
20
81
7
62
50
3
1
44
1.29
2414--2455
21
2.0
21
100
0
84
38
23
14
23
1.92
9284--9356
33
2.2
33
78
4
85
15
28
41
15
1.87
9373--9435
33
1.9
33
90
6
101
11
39
36
12
1.79
9374--9503
33
3.9
34
77
15
98
14
41
30
13
1.84
9559--9862
32
9.4
32
91
1
421
13
28
40
16
1.87
26333--26363
16
1.9
16
100
0
62
54
6
0
38
1.26
26526--26965
163
2.7
163
85
5
580
39
16
15
29
1.88
26526--26965
165
2.7
161
86
4
574
39
16
15
29
1.88
31133--31157
2
12.5
2
100
0
50
52
0
0
48
1.00
34590--34670
34
2.4
34
85
6
101
18
3
25
51
1.62
34606--34675
35
2.0
34
91
8
115
17
2
18
61
1.47
34852--34881
2
15.0
2
100
0
60
50
0
0
50
1.00
36887--37969
228
4.7
228
82
2
1093
24
24
20
30
1.99
41136--41165
15
2.0
15
93
0
51
20
10
26
43
1.83
49508--49553
2
23.0
2
100
0
92
50
0
0
50
1.00

Tables:   1

The End!