Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012109.1 Corchorus capsularis cultivar CVL-1 contig12130, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35185

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
900--975
38
2.0
38
94
0
134
55
10
23
10
1.65
1689--1731
21
2.1
20
87
12
61
48
9
9
32
1.67
1806--1838
9
3.7
9
95
0
57
78
0
21
0
0.75
3179--3246
35
1.9
36
81
3
84
20
17
20
41
1.91
3401--3464
29
2.2
30
91
2
103
21
23
26
28
1.99
3375--3556
94
1.9
93
85
1
247
24
23
23
29
1.99
3434--3560
64
2.0
65
82
4
159
25
24
21
29
1.99
3524--3621
35
2.8
35
82
1
117
23
22
17
36
1.94
3652--3826
71
2.4
72
80
8
187
16
19
26
37
1.93
9352--9492
33
4.3
32
79
7
122
25
9
23
41
1.84
9482--9590
33
3.3
33
94
0
191
27
11
17
44
1.82
9439--9590
66
2.3
66
81
2
171
30
10
17
40
1.84
9919--9975
30
1.9
30
89
7
89
28
17
36
17
1.93
12246--13050
35
23.3
35
86
5
1109
39
10
17
32
1.84
12535--12587
27
2.0
27
85
7
72
33
13
22
30
1.92
15526--15600
27
2.7
28
85
4
116
44
25
12
18
1.84
22206--22380
33
5.3
33
97
0
323
44
18
10
26
1.83
22206--22413
99
2.1
99
88
1
301
42
18
10
27
1.83
22406--22510
33
3.2
33
79
2
122
45
19
9
25
1.80
23964--23989
9
2.9
9
100
0
52
11
0
0
88
0.52

Tables:   1

The End!