Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012114.1 Corchorus capsularis cultivar CVL-1 contig12135, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55600

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
126--245
44
2.8
44
87
5
174
35
15
14
35
1.88
208--375
22
8.1
20
74
11
104
34
16
9
39
1.81
233--375
22
6.8
21
76
12
114
34
16
9
40
1.80
146--378
22
10.9
22
69
9
99
33
16
10
38
1.84
379--421
22
2.0
22
85
0
59
51
18
4
25
1.66
1331--1391
31
2.0
31
93
0
104
54
4
18
22
1.63
6924--6985
31
2.1
29
85
11
81
56
19
9
14
1.65
29937--29961
2
12.5
2
100
0
50
48
0
0
52
1.00
30168--30210
15
2.8
15
82
3
50
62
6
9
20
1.48
32361--32564
37
5.5
38
77
11
217
20
20
19
39
1.92
32360--32562
74
2.7
73
87
3
289
20
20
18
39
1.92
32361--32564
111
1.8
111
86
4
295
20
20
19
39
1.92
34375--34563
37
5.1
37
85
3
184
20
20
17
41
1.90
34959--35223
8
33.5
8
65
20
80
60
1
13
24
1.41
34951--35064
24
4.8
24
70
7
90
58
0
16
24
1.38
34951--35076
46
2.7
46
83
8
141
59
0
15
24
1.36
35001--35225
4
59.0
4
66
12
57
63
1
10
24
1.36
35001--35226
25
9.2
23
67
22
79
63
1
10
23
1.35
35098--35145
15
3.3
15
82
2
62
64
0
8
27
1.22
35124--35224
7
14.1
7
70
20
59
63
1
8
25
1.34
35112--35225
35
3.2
35
70
21
101
63
1
9
25
1.35
35099--35215
35
3.4
34
73
19
100
62
1
9
26
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35220--35253
13
2.5
14
95
4
61
64
5
0
29
1.17
35642--35672
16
1.9
16
93
0
53
41
12
3
41
1.59
41410--41477
27
2.5
27
77
15
70
27
14
23
33
1.94
41816--41898
24
3.2
24
64
18
58
26
25
18
30
1.98
41524--41970
54
8.3
53
85
4
470
31
22
18
27
1.97
41943--41999
29
2.0
29
96
0
105
28
22
21
28
1.99
41837--42104
136
2.0
136
90
0
419
27
22
20
29
1.99
41891--42052
83
2.0
82
92
1
270
27
22
20
29
1.99
41972--42194
53
4.1
54
84
7
267
27
21
20
29
1.98
41727--42193
245
1.9
246
84
3
638
28
22
20
28
1.98
42391--42489
51
1.9
52
81
4
119
17
29
13
40
1.87
43283--43355
37
2.0
36
89
10
112
30
10
10
47
1.73
43292--43370
37
2.1
39
85
4
108
34
12
12
40
1.81
43755--43785
14
2.2
14
94
0
53
35
16
6
41
1.74
47438--47497
21
2.9
20
73
14
59
55
13
6
25
1.62
47470--47510
21
2.0
21
90
0
64
53
17
4
24
1.63
48927--48970
10
4.4
10
100
0
88
52
18
9
20
1.72
51388--51413
13
2.0
13
100
0
52
7
23
15
53
1.67
52590--52628
21
1.9
21
94
5
71
10
28
30
30
1.90
53755--53784
15
2.0
15
93
0
51
70
6
10
13
1.34
53802--53840
6
6.7
6
91
2
62
51
12
2
33
1.54
55205--55236
11
2.9
11
90
0
55
43
18
0
37
1.51

Tables:   1

The End!