Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012115.1 Corchorus capsularis cultivar CVL-1 contig12136, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24742

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1923--1965
20
2.1
20
82
4
50
13
13
6
65
1.46
3314--3392
38
2.1
38
83
7
97
45
24
2
27
1.66
4649--4693
15
3.0
15
80
0
54
22
31
22
24
1.99
6104--6146
21
2.1
21
86
4
61
27
18
16
37
1.92
6517--6543
3
9.0
3
100
0
54
66
33
0
0
0.92
9859--9885
2
13.5
2
100
0
54
48
0
0
51
1.00
20849--20931
15
5.5
15
72
20
66
53
0
6
40
1.26
20896--20952
29
2.0
30
82
6
73
49
1
8
40
1.44
20925--20969
13
3.5
13
81
6
56
42
2
11
44
1.52
21262--21295
16
2.2
16
89
5
52
58
8
2
29
1.43
21297--21374
36
2.2
36
81
4
86
57
10
11
20
1.62

Tables:   1

The End!