Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012116.1 Corchorus capsularis cultivar CVL-1 contig12137, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8706

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
465--579
39
2.8
41
79
13
130
19
11
27
41
1.85
787--860
28
2.6
28
84
0
94
17
12
25
44
1.83
4740--4822
38
2.1
39
86
4
114
51
3
20
24
1.63
4930--5016
16
5.4
16
72
20
83
56
3
22
17
1.56
4905--5019
32
3.6
32
93
0
194
51
2
26
19
1.60
4923--5107
32
5.0
36
82
13
120
53
3
23
19
1.60
5106--5225
32
3.9
32
81
12
162
51
5
17
25
1.65
5111--5163
17
3.2
17
66
28
51
52
5
15
26
1.64
5178--5231
26
2.1
26
93
6
92
53
3
14
27
1.58
5242--5348
36
2.8
37
83
9
119
57
3
19
18
1.55
5226--5309
21
4.0
21
79
3
78
58
3
20
17
1.54
5218--5311
7
13.1
7
74
7
64
59
3
19
18
1.51
5226--5371
14
11.0
14
67
19
71
55
4
20
19
1.61
5380--5558
21
8.2
22
83
6
222
50
6
22
20
1.70
5383--5611
43
5.5
42
82
11
240
49
5
23
20
1.70
5493--5559
15
4.5
15
71
14
57
56
4
17
20
1.58
5516--5595
35
2.2
37
86
8
119
51
3
22
22
1.64
5553--5611
21
2.8
22
77
7
52
47
3
25
23
1.67
6137--6597
177
2.6
176
81
5
559
34
14
15
35
1.88
6884--6945
28
2.3
26
89
8
90
38
12
20
27
1.90
8253--8366
58
2.0
58
92
0
192
26
4
22
46
1.70
8350--8378
2
14.5
2
100
0
58
48
0
0
51
1.00

Tables:   1

The End!