Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012118.1 Corchorus capsularis cultivar CVL-1 contig12139, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105140

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6925--7002
39
2.0
40
87
2
113
28
14
16
41
1.87
8121--8161
18
2.2
19
91
4
66
24
4
7
63
1.40
8198--8230
2
16.5
2
100
0
66
51
0
0
48
1.00
9679--9726
3
16.3
3
95
4
89
0
31
0
68
0.90
15071--15099
12
2.4
12
100
0
58
44
0
17
37
1.49
16967--17048
16
5.2
16
78
8
96
17
9
34
39
1.82
16941--17048
32
3.4
32
92
2
164
15
10
35
38
1.82
17197--17321
16
8.1
15
76
8
108
5
13
32
48
1.66
17197--17315
31
3.8
31
91
2
184
5
13
31
49
1.63
17197--17315
63
1.9
62
89
1
184
5
13
31
49
1.63
17211--17333
63
2.0
63
83
3
158
5
14
33
46
1.68
17883--17908
2
13.0
2
100
0
52
50
0
0
50
1.00
17921--18160
131
1.8
131
95
0
435
37
14
16
30
1.89
26340--26379
21
1.9
21
85
10
55
50
10
7
32
1.64
32041--32066
12
2.2
12
100
0
52
61
7
7
23
1.49
34660--34686
4
6.8
4
100
0
54
22
0
0
77
0.76
46003--46042
21
1.9
21
90
10
64
67
5
25
2
1.23
50116--50150
18
2.0
18
94
5
63
54
22
11
11
1.68
59175--59332
31
5.1
31
83
4
129
36
24
20
18
1.95
59258--59344
31
2.8
31
91
0
138
33
24
22
19
1.97
65653--65700
23
2.1
23
88
0
69
25
4
33
37
1.75
76941--77004
30
2.1
30
83
11
78
18
40
15
25
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77966--78056
35
2.6
35
96
0
164
21
21
25
30
1.99
78517--78553
18
2.1
18
89
0
56
21
37
18
21
1.94
84757--84793
18
2.1
18
100
0
74
27
35
16
21
1.94
87968--88117
72
2.1
72
86
5
205
22
8
26
42
1.83
89435--89585
72
2.1
72
81
4
171
27
7
22
43
1.79
90408--90506
21
4.7
23
75
20
92
6
28
9
56
1.54
90441--90480
18
2.2
19
95
4
73
5
32
10
52
1.56
90599--90646
24
2.0
24
95
0
87
31
16
14
37
1.89

Tables:   1

The End!