Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012119.1 Corchorus capsularis cultivar CVL-1 contig12140, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18556

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2644--2841
102
1.9
102
95
0
360
37
12
7
43
1.69
3018--3083
31
2.1
31
88
5
98
28
19
4
46
1.69
3833--3972
22
6.3
22
78
9
131
32
8
20
39
1.82
3877--3965
46
1.9
46
81
4
108
32
10
19
38
1.85
3832--3972
68
2.1
66
82
5
167
31
8
20
39
1.83
4012--4068
24
2.5
22
80
8
69
38
8
17
35
1.81
4162--4390
22
10.5
22
72
10
148
41
9
14
34
1.78
4496--4545
19
2.6
19
80
3
55
40
14
20
26
1.90
4430--5030
22
27.8
22
68
14
177
38
10
15
34
1.83
6451--6497
18
2.5
20
79
6
62
38
0
10
51
1.37
10054--10179
45
2.8
46
96
2
236
34
12
6
46
1.68
15465--15495
2
15.5
2
100
0
62
51
0
0
48
1.00
18122--18224
30
3.4
30
86
1
134
32
25
24
18
1.97

Tables:   1

The End!