Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012125.1 Corchorus capsularis cultivar CVL-1 contig12146, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40645

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
271--319
25
2.0
25
84
4
64
36
0
28
34
1.58
340--382
21
2.0
22
86
4
61
37
6
34
20
1.80
22193--22243
21
2.5
20
80
6
57
29
25
17
27
1.98
29147--29220
39
2.0
36
89
10
114
31
14
18
35
1.92
33547--33612
31
2.1
31
86
5
89
28
19
3
48
1.64
34086--34226
22
6.3
22
75
9
115
33
9
19
36
1.85
34337--34619
22
12.8
21
67
18
96
39
10
15
34
1.81
34725--34775
19
2.6
20
90
6
86
45
11
17
25
1.83
34725--35281
22
25.7
22
68
12
172
39
9
14
35
1.79
34932--35011
23
3.5
23
78
8
83
38
6
13
41
1.70
35436--35685
22
11.5
22
72
14
137
42
9
14
34
1.78
35535--35688
66
2.3
66
83
4
195
41
9
14
35
1.77
35436--36233
44
18.7
43
68
17
187
39
9
16
35
1.80
35766--35838
22
3.6
20
78
10
76
43
9
16
30
1.80
35785--36233
22
20.7
22
71
10
187
38
10
15
36
1.81
36259--36299
22
1.9
21
85
5
55
51
7
7
34
1.58
36311--36364
22
2.5
22
84
0
63
40
11
11
37
1.76
39411--39439
8
3.6
8
100
0
58
10
37
10
41
1.73
39533--39560
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!