Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012126.1 Corchorus capsularis cultivar CVL-1 contig12147, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37402

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5868--5897
2
15.0
2
92
0
51
46
3
0
50
1.18
8499--8568
21
3.3
20
69
23
63
60
2
4
32
1.31
10745--10917
95
1.8
93
85
9
244
55
2
9
32
1.45
11247--11287
20
2.0
20
95
0
73
43
14
14
26
1.84
11438--11697
137
1.9
140
83
4
339
38
10
1
50
1.44
13298--13354
25
2.4
24
82
5
62
31
3
3
61
1.30
13691--13729
3
13.0
3
100
0
78
66
0
0
33
0.92
14112--14249
49
2.7
50
87
4
188
49
10
10
29
1.71
17087--17136
6
8.0
6
78
8
55
78
2
16
4
1.00
17386--17495
57
1.9
58
90
1
177
43
4
42
9
1.56
18514--18551
20
2.0
20
89
5
60
7
13
2
76
1.11
23211--23271
21
3.2
20
65
26
51
32
4
13
49
1.63
23216--23291
36
2.1
36
97
0
143
32
5
11
50
1.62
23297--23337
20
2.1
20
86
4
57
19
36
9
34
1.85
23397--23453
25
2.3
25
82
11
73
35
28
0
36
1.58
23407--23459
25
2.2
25
90
6
83
33
24
0
41
1.55
23469--23536
26
2.6
26
95
0
118
52
11
1
33
1.47
23469--23536
15
5.1
15
70
26
62
52
11
1
33
1.47
26558--26603
15
3.1
15
90
6
76
52
19
0
28
1.47
29136--29167
2
16.5
2
93
6
57
50
0
0
50
1.00
34288--34329
15
2.7
16
81
3
50
69
11
2
16
1.29

Tables:   1

The End!