Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012127.1 Corchorus capsularis cultivar CVL-1 contig12148, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42232

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2992--3031
20
2.0
20
85
9
55
37
15
5
42
1.68
6727--7008
97
2.9
97
93
0
465
34
17
26
21
1.96
6636--7003
49
7.6
48
76
3
281
33
17
26
21
1.96
9766--9814
20
2.4
20
96
3
89
46
30
10
12
1.74
10578--10749
59
2.9
60
90
0
274
34
19
23
22
1.96
11185--11427
42
5.7
41
85
7
285
26
15
34
22
1.94
11977--12213
79
3.0
79
92
0
386
29
16
24
29
1.96
12204--12389
59
3.0
60
86
7
214
35
19
22
22
1.96
12236--12389
59
2.6
60
89
2
238
36
17
22
23
1.95
13065--13112
25
1.9
25
100
0
96
54
8
8
29
1.60
14148--14178
2
15.5
2
100
0
62
48
0
0
51
1.00
15063--15095
2
17.0
2
93
6
59
48
0
0
51
1.00
16246--16303
28
2.1
28
83
0
71
37
12
13
36
1.82
16274--17218
434
2.2
432
83
3
1159
42
12
14
31
1.82
17659--17686
2
14.0
2
100
0
56
50
0
0
50
1.00
24421--25049
193
3.3
193
100
0
1258
29
21
10
38
1.87
30442--30467
10
2.6
10
100
0
52
38
30
19
11
1.87
39127--39152
1
26.0
1
100
0
52
100
0
0
0
0.00
41737--41777
14
2.7
16
81
11
50
68
2
7
21
1.26
42195--42232
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1

The End!