Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012130.1 Corchorus capsularis cultivar CVL-1 contig12151, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26035

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
192--533
22
15.6
22
70
16
192
37
9
16
37
1.80
589--803
22
9.9
22
71
10
131
34
10
18
36
1.85
774--822
22
2.2
22
81
0
53
48
6
16
28
1.69
833--878
19
2.7
16
78
18
56
36
6
13
43
1.69
867--928
23
2.8
22
79
13
58
45
4
8
41
1.55
3029--3058
15
2.0
15
93
0
51
20
10
26
43
1.83
12721--12803
42
2.0
43
85
7
116
36
21
18
24
1.95
13096--13327
114
2.0
116
93
4
398
38
7
20
33
1.81
13606--13647
2
21.5
2
86
13
61
50
0
2
47
1.14
13606--13647
19
2.3
18
91
4
66
50
0
2
47
1.14
14197--14239
2
21.5
2
85
0
59
44
4
2
48
1.36
16231--16272
20
2.1
21
86
8
61
28
7
7
57
1.52
22844--22885
20
2.1
21
86
8
61
28
7
7
57
1.52
24466--24497
13
2.4
14
85
15
50
53
12
6
28
1.62
25776--25811
19
1.9
18
88
5
54
33
22
2
41
1.68

Tables:   1

The End!