Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012131.1 Corchorus capsularis cultivar CVL-1 contig12152, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62814

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2374--2441
30
2.3
30
87
10
95
8
27
42
20
1.82
6289--6324
18
2.1
17
94
5
63
11
16
8
63
1.49
9018--9044
9
3.0
9
100
0
54
44
11
11
33
1.75
9156--9185
2
15.5
2
93
6
53
53
0
0
46
1.00
12877--12905
2
14.5
2
100
0
58
48
0
0
51
1.00
13170--13278
55
2.0
54
96
1
200
23
21
17
37
1.94
13255--13308
24
2.2
25
96
3
101
25
22
11
40
1.87
18378--18419
20
2.1
21
91
8
70
59
4
7
28
1.44
21699--21747
12
4.1
13
77
12
52
59
10
2
28
1.41
21699--21747
24
2.0
24
84
7
64
59
10
2
28
1.41
25509--25548
20
2.0
20
85
0
53
45
17
2
35
1.62
27051--27099
21
2.3
21
85
0
62
28
28
32
10
1.90
30119--30250
62
2.2
62
80
10
139
35
6
31
25
1.82
35190--35224
2
17.5
2
100
0
70
0
0
48
51
1.00
36956--37024
30
2.3
30
83
14
81
17
14
30
37
1.90
41406--41623
106
2.0
106
91
2
348
33
9
23
33
1.87
41685--41760
40
1.9
40
91
0
125
51
5
3
39
1.43
44693--44774
42
2.0
42
100
0
164
19
17
9
53
1.70
46846--46871
4
6.5
4
100
0
52
76
0
0
23
0.78
50052--50078
4
6.8
4
100
0
54
77
0
0
22
0.76
56665--56745
40
2.0
40
100
0
162
34
14
17
33
1.90
56730--56759
4
7.5
4
100
0
60
50
0
26
23
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59649--59684
16
2.3
15
90
4
54
72
0
0
27
0.85
59831--59861
7
4.4
7
100
0
62
0
12
12
74
1.08
60254--60407
53
2.9
53
92
2
238
38
27
15
18
1.91
60388--60464
30
2.5
30
80
16
79
40
28
12
18
1.87

Tables:   1

The End!