Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012134.1 Corchorus capsularis cultivar CVL-1 contig12155, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119739

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7261--7381
61
2.0
58
88
4
179
41
13
22
23
1.88
13689--13748
29
2.1
29
100
0
120
50
3
20
26
1.64
26320--26465
77
1.9
77
85
2
204
37
24
7
30
1.83
34957--34997
17
2.3
18
91
4
66
51
7
2
39
1.43
35407--35491
31
2.7
31
74
5
73
17
12
27
42
1.86
52184--52225
17
2.5
17
96
0
75
47
26
0
26
1.52
56294--56319
6
4.3
6
100
0
52
15
50
34
0
1.45
67587--67626
9
4.4
9
83
0
53
55
0
2
42
1.13
75933--75967
16
2.1
17
89
5
54
2
20
0
77
0.90
76008--76339
107
3.1
107
82
8
361
41
6
9
41
1.64
76463--76511
2
24.5
2
87
8
73
48
4
0
46
1.20
77325--77360
2
17.5
2
88
5
54
47
5
0
47
1.25
79777--80014
119
2.0
118
90
0
377
35
20
13
30
1.92
81336--81406
23
3.2
23
79
15
78
19
16
5
57
1.59
81382--81437
15
3.9
15
74
9
62
16
21
5
57
1.59
81418--81533
21
5.4
21
80
2
133
20
21
7
50
1.73
81572--81621
22
2.3
21
82
3
64
16
22
4
58
1.55
81596--81722
35
3.6
35
86
5
148
18
24
2
55
1.54
83295--83329
15
2.3
15
90
0
52
11
5
8
74
1.22
86589--86650
31
2.0
31
100
0
124
45
22
12
19
1.84
90745--90773
1
29.0
1
100
0
58
100
0
0
0
0.00
92154--92189
5
7.6
5
93
6
58
58
19
22
0
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94064--94097
16
2.1
16
94
0
59
20
8
35
35
1.84
96425--96649
70
3.1
70
83
9
297
48
0
12
37
1.45
96419--96649
78
3.1
77
88
6
341
49
0
12
37
1.44
96745--96790
6
7.8
6
92
4
76
52
0
13
34
1.40
97186--97295
54
2.0
54
89
0
166
34
20
19
26
1.96
97566--97726
78
2.0
80
96
2
299
45
6
14
34
1.70
100973--101040
31
2.2
31
81
5
75
27
16
10
45
1.79
102291--102337
15
3.1
15
81
3
58
53
0
2
44
1.12
114197--114229
13
2.6
13
85
4
50
66
0
0
33
0.92
114198--114235
10
3.5
11
89
10
60
65
0
0
34
0.93
117067--117092
2
13.0
2
100
0
52
50
0
0
50
1.00
119600--119655
29
1.9
29
96
0
103
39
21
14
25
1.91

Tables:   1

The End!