Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012136.1 Corchorus capsularis cultivar CVL-1 contig12157, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46947

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1996--2028
2
16.5
2
93
0
57
54
45
0
0
0.99
2831--2875
21
2.1
21
83
0
54
33
4
31
31
1.78
7469--7505
15
2.5
15
90
0
56
24
35
16
24
1.95
7999--8063
34
1.9
34
90
0
103
49
16
16
16
1.80
8279--8320
21
2.0
21
95
0
75
69
0
21
9
1.17
9091--9186
48
2.0
48
93
0
165
12
18
26
42
1.86
15913--15997
41
2.0
43
86
11
122
23
14
12
49
1.77
42759--42807
13
3.9
13
76
10
57
0
38
0
61
0.96
42753--42809
11
4.7
11
74
18
51
0
38
1
59
1.08
42870--42904
11
3.0
11
91
8
52
0
42
0
57
0.99
43785--43849
21
3.3
21
68
24
68
6
21
20
52
1.68
44021--44054
17
2.0
17
94
0
59
55
14
11
17
1.68
44633--44749
27
4.3
27
88
0
171
19
41
17
21
1.91
46466--46509
12
3.7
12
81
0
52
15
13
52
18
1.75
46466--46506
18
2.3
18
91
0
64
14
14
53
17
1.73
46634--46705
32
2.2
33
95
2
128
38
6
16
37
1.76

Tables:   1

The End!