Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012137.1 Corchorus capsularis cultivar CVL-1 contig12158, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92270

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6122--6152
2
15.5
2
100
0
62
51
0
0
48
1.00
7411--7435
10
2.5
10
100
0
50
24
8
20
48
1.76
13422--13460
6
6.7
6
97
2
71
53
12
0
33
1.39
20463--20492
2
14.5
2
93
6
51
50
3
0
46
1.18
22141--22173
16
2.1
17
88
11
52
63
18
0
18
1.31
35659--35691
2
17.0
2
93
6
59
51
0
0
48
1.00
35836--35904
34
2.0
34
88
0
102
50
2
8
37
1.48
36639--36687
12
4.0
12
76
5
53
28
10
34
26
1.89
36710--36742
12
2.6
13
85
4
50
36
36
9
18
1.82
39070--39138
35
2.0
35
91
0
111
17
20
7
55
1.65
42745--42793
18
2.7
18
100
0
98
59
0
0
40
0.98
44366--44399
13
2.5
13
95
4
59
73
8
17
0
1.08
44979--45025
24
2.0
24
91
0
76
34
27
17
21
1.95
45074--45206
51
2.7
52
83
6
168
27
9
27
36
1.87
54551--54592
16
2.6
17
85
10
54
73
0
26
0
0.83
54547--54609
23
2.7
24
73
4
67
66
0
30
3
1.07
55175--55201
7
3.9
7
100
0
54
44
14
14
25
1.84
55195--55342
53
2.9
52
88
9
218
56
7
20
14
1.62
55389--55460
23
3.4
20
82
16
67
52
6
20
19
1.68
55389--55858
22
21.7
22
75
11
307
54
4
19
21
1.63
55389--55844
44
10.5
45
75
10
400
53
5
19
21
1.64
55389--55840
66
7.0
66
76
12
368
53
5
19
21
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55717--55824
7
14.7
7
69
8
63
56
3
19
20
1.57
55526--55901
173
2.2
173
83
5
474
53
3
20
21
1.61
55847--55908
14
4.4
14
74
11
63
53
6
20
19
1.67
55878--55944
35
1.9
34
90
3
98
55
2
20
20
1.57
55762--55973
78
2.7
76
76
14
225
55
4
19
20
1.61
55976--56037
21
2.9
21
76
11
63
48
8
16
27
1.74
63168--63215
19
2.5
19
86
0
78
77
2
16
4
1.03
63682--63707
2
13.0
2
100
0
52
50
0
0
50
1.00
92020--92270
132
1.9
133
90
4
407
32
17
13
36
1.89

Tables:   1

The End!