Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012139.1 Corchorus capsularis cultivar CVL-1 contig12160, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40279

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1126--1194
29
2.4
30
82
7
88
18
30
11
39
1.87
1266--1347
32
2.6
32
88
0
119
17
26
28
28
1.97
1383--1458
30
2.6
30
91
2
118
38
14
27
19
1.91
3566--3821
133
1.9
133
92
1
433
26
27
18
26
1.98
18080--18120
2
20.0
2
95
5
73
48
0
2
48
1.14
18197--18236
3
13.7
3
94
5
73
35
0
0
65
0.93
18961--18991
10
3.1
10
95
0
53
16
3
0
80
0.83
20274--20323
17
2.9
17
90
0
73
26
16
36
22
1.94
20658--21157
156
3.2
155
79
8
496
35
21
14
29
1.92
29701--29754
28
1.9
28
88
7
83
33
5
3
57
1.40
29830--29899
30
2.3
31
85
2
88
34
21
15
28
1.94
40038--40120
42
2.0
42
88
4
123
37
10
19
32
1.86
40172--40272
32
3.1
32
91
1
148
13
34
35
15
1.88

Tables:   1

The End!