Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012140.1 Corchorus capsularis cultivar CVL-1 contig12161, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100765

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24--111
33
2.7
33
91
3
133
10
31
40
17
1.82
34--86
16
3.2
16
70
15
54
7
28
45
18
1.77
117--158
14
2.7
15
82
14
50
54
2
28
14
1.52
2317--2346
11
2.7
11
94
0
51
46
3
0
50
1.18
9850--9936
45
1.9
45
93
4
149
26
20
18
34
1.96
10316--10373
27
2.1
27
100
0
116
31
13
17
37
1.89
11505--11594
45
2.0
45
97
0
171
24
23
20
32
1.98
18000--18063
33
1.9
33
96
0
119
32
20
18
28
1.96
18068--18128
29
2.1
29
93
0
104
31
21
14
32
1.93
23543--23989
166
2.7
164
82
3
538
29
14
15
40
1.87
29685--29733
21
2.3
21
80
16
57
32
14
12
40
1.83
31791--31840
16
3.1
16
94
0
91
50
8
6
36
1.57
36949--36983
5
6.8
5
96
3
61
82
0
0
17
0.66
37288--37647
155
2.3
154
80
8
399
34
20
15
29
1.93
39318--39355
1
38.0
1
94
0
67
97
0
2
0
0.18
42272--42302
6
5.2
6
100
0
62
16
35
32
16
1.91
48009--48058
21
2.4
21
80
6
57
52
14
10
24
1.71
74387--74422
1
36.0
1
100
0
72
0
0
0
100
0.00
87532--87609
31
2.5
31
82
2
84
33
14
19
33
1.91
91918--91970
27
2.0
27
85
7
72
22
28
15
33
1.94
93458--93527
36
2.0
35
83
8
88
38
28
14
18
1.90
93938--94037
51
1.9
52
86
8
141
10
17
15
58
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93912--94051
53
2.6
52
79
12
133
12
17
15
55
1.70
98164--98198
14
2.5
14
90
9
54
34
14
5
45
1.68

Tables:   1

The End!