Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012142.1 Corchorus capsularis cultivar CVL-1 contig12163, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89851

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1658--1690
15
2.1
16
88
5
50
21
0
3
75
0.93
4759--4802
11
4.1
11
77
16
56
36
18
15
29
1.92
5611--5654
11
4.1
11
77
16
56
29
18
18
34
1.94
7589--7613
2
12.5
2
100
0
50
48
0
0
52
1.00
7841--7870
2
15.0
2
92
0
51
46
0
3
50
1.18
7867--7892
6
4.3
6
100
0
52
34
15
15
34
1.89
12428--12497
28
2.5
27
81
4
86
48
21
10
20
1.78
12894--13103
70
3.0
71
83
2
262
38
20
19
21
1.94
12962--13131
70
2.7
60
73
16
160
38
22
20
18
1.93
13142--13400
70
3.7
70
91
2
423
38
21
18
21
1.93
13385--13491
36
3.0
36
78
4
128
41
26
15
16
1.89
13284--13636
189
1.9
190
95
0
636
39
22
18
19
1.93
13586--13685
35
2.9
35
83
3
121
44
22
17
17
1.87
13589--13700
35
3.2
34
79
5
109
44
21
16
17
1.86
14765--14820
17
3.4
16
78
7
58
1
19
0
78
0.84
14765--14810
8
5.9
8
82
10
51
0
21
0
78
0.76
14766--14810
22
2.0
22
86
8
63
0
22
0
77
0.76
15120--15180
29
2.1
29
81
6
70
13
22
0
63
1.28
15504--15653
46
3.4
44
83
7
205
35
18
7
38
1.79
15504--15653
44
3.4
45
85
4
216
35
18
7
38
1.79
15658--15698
17
2.4
17
91
0
64
0
17
0
82
0.66
15659--15694
7
4.9
7
90
10
54
0
16
0
83
0.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21544--22416
311
2.8
312
91
2
1352
25
27
11
36
1.90
26723--26782
11
5.7
11
74
18
56
38
1
20
40
1.62
42580--42678
49
2.0
50
92
4
164
43
10
8
38
1.68
52721--52791
30
2.4
30
88
4
99
15
14
26
43
1.85
58532--58660
67
1.9
67
88
0
195
25
14
17
41
1.88
62614--62638
12
2.1
12
100
0
50
40
16
8
36
1.77
64872--64909
18
2.1
19
90
5
60
28
13
39
18
1.88
68191--68253
30
2.1
30
88
5
92
26
15
36
20
1.93
71665--71730
24
2.6
26
76
11
64
57
4
1
36
1.28
71691--71806
12
9.5
12
65
23
55
54
2
0
42
1.20
71699--71764
14
4.6
14
72
7
51
53
3
1
42
1.25
71641--71770
70
1.9
68
87
4
190
53
3
1
42
1.26
71691--71780
46
2.1
41
84
14
110
52
2
1
44
1.20
71727--71801
33
2.4
30
88
8
105
53
2
1
42
1.23
71699--71793
44
2.2
44
83
7
122
54
3
1
41
1.23
71865--71907
22
2.0
21
90
4
59
32
37
13
16
1.88
72920--73019
44
2.3
44
89
0
155
27
24
7
42
1.80
73812--73860
25
1.9
25
83
4
62
20
18
6
55
1.64
73868--73892
9
2.8
9
100
0
50
20
20
0
60
1.37
73857--73990
7
18.7
7
71
12
60
17
20
2
58
1.51
73857--73992
14
9.5
14
71
15
73
17
20
2
58
1.51
74087--74127
15
2.9
15
78
7
50
19
17
7
56
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74085--74217
14
9.6
14
71
9
76
22
19
6
51
1.68
74116--74326
20
10.9
20
75
15
160
22
21
4
51
1.66
74087--74331
96
2.5
96
84
6
300
21
21
5
52
1.66
74198--74353
20
7.8
20
77
15
137
19
23
4
52
1.64
74277--74306
15
2.0
15
93
0
51
20
26
3
50
1.64
74129--74357
57
4.0
55
77
12
194
20
22
4
51
1.66
74372--74472
37
2.8
35
73
10
96
26
20
1
50
1.59
74525--74573
20
2.3
22
86
6
66
22
22
6
48
1.72
74637--74704
18
3.8
18
84
7
93
27
20
7
44
1.78
78305--78378
28
2.6
28
89
2
103
14
12
29
43
1.82
80106--80138
17
2.0
17
88
5
50
48
6
33
12
1.65
82431--82549
37
3.3
36
76
15
138
48
5
17
28
1.68
82417--82568
71
2.1
71
84
7
209
50
4
19
25
1.66
82572--82619
22
2.2
22
92
0
78
64
2
16
16
1.39
82597--82693
16
6.3
16
67
20
64
52
7
22
17
1.69
82666--82774
40
2.7
40
91
0
173
53
4
21
21
1.64
82666--82790
40
3.2
39
85
9
166
52
4
21
20
1.65
82851--82918
26
2.6
25
81
6
64
50
4
19
26
1.66
82976--83016
14
3.0
13
85
7
55
48
7
19
24
1.74
83126--83185
27
2.2
28
84
3
77
55
1
26
16
1.51

Tables:   1

The End!