Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01012143.1 Corchorus capsularis cultivar CVL-1 contig12164, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18731

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2934--3130
83
2.3
85
81
7
224
17
23
2
56
1.53
2928--3133
30
7.3
28
75
12
163
17
23
2
56
1.53
2934--3135
57
3.5
59
75
11
163
17
23
2
56
1.52
3088--3150
27
2.3
27
83
5
74
19
17
4
58
1.56
3199--3317
7
16.6
7
68
17
57
18
24
2
54
1.56
3199--3332
29
4.4
29
72
20
76
19
23
2
54
1.55
3283--3333
15
3.5
15
76
15
61
21
25
1
50
1.59
3155--3317
36
4.5
36
83
6
195
19
22
2
55
1.55
3360--3440
40
2.0
40
88
4
119
20
24
3
50
1.64
3363--3454
40
2.3
40
81
7
107
22
23
3
50
1.64
3518--3657
40
3.5
39
72
7
111
22
20
5
51
1.67
3636--3871
32
7.4
32
79
6
239
18
25
5
50
1.67
3635--3902
64
4.3
63
78
7
242
17
25
4
52
1.64
3652--3865
95
2.2
96
82
5
247
18
25
4
50
1.66
3991--4063
32
2.3
32
85
4
94
20
24
6
47
1.74
4052--4137
38
2.2
40
81
4
113
25
23
2
48
1.62

Tables:   1

The End!